Lectures

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  Alexander E. Kel, Olga V. Kel-Margoulis, Vladimir N. Babenko, Nikolay A. Kolchanov, Edgar Wingender: Combinatorial identification of promoters induced upon immune cell activation.
• 
  Alvis Brazma, Inge Jonassen, Jaak Vilo, Esko Ukkonen: Predicting gene regulatory elements from their expression data in the complete yeast genome.
• 
  Edgar Wingender, Xin Chen, T. Heinemeyer, Alexander E. Kel, Ines Liebich, T. Meinhardt: A hierarchy of databases for modeling gene regulatory mechanisms.
• 
  Thomas Werner, Andreas Klingenhoff, Kornelie Frech, Kerstin Quandt: Modular modeling correlates with functional promoter diversification of human MHC class I promoters although nucleotide sequence conservation is not correlated.
• 
  Michael Zuker: [Invited Lecture] The other folding problem: Algorithms and thermodynamics for nucleic acid secondary structure.
• 
  Uta Bohnebeck, Werner Sälter, Tamás Horváth, Stefan Wrobel, Dietmar Blohm: Measuring similarity of RNA structures by relational instance-based learning: A first step toward detecting RNA signal structures in silico.
• 
  Ralf Bundschuh, Terence Hwa: Detectability of Sequence Homology by DNA Hybridization.
• 
  Gunnar von Heijne: [Invited Lecture] Picking out membrane proteins.
• 
  Dmitrij Frishman, Andrey A. Mironov, Hans-Werner Mewes, Mikhail S. Gelfand: Combining diverse evidence for gene recognition in completely sequenced bacterial genomes.
• 
  Christoph Sensen, Terry Gaasterland: [Invited Lecture] Automated genome analysis using MAGPIE.
• 
  Steffen Möller, Ulf Leser, Wolfgang Fleischmann, Rolf Apweiler: EDITtoTrEMBL: A distributed approach to high-quality automated protein sequence annotation.
• 
  Claire O'Donovan, Maria Jesus Martin, Eric Glémet, Jean-Jacques Codani, Rolf Apweiler: Removing Redundancy in SWISS-PROT and TrEMBL.
• 
  Wolfgang Fleischmann, Steffen Möller, Alain Gateau, Rolf Apweiler: A novel method for automatic and reliable functional annotation of proteins.
• 
  Eors Szathmary: [Invited Lecture] The Evolution of Information storage and heredity.
• 
  Hanspeter Herzel, Olaf Weiss, Edward N. Trifonov: Sequence Periodicities in Complete Genomes Reflect Supercoiling.
• 
  Sean R. Eddy: [Invited Lecture] Genome sequence analysis and profile hidden Markov models.
• 
  Thomas Dandekar, Stefan Schuster, Martijn A. Huynen, Peer Bork: Pathway alignment: Application in the comparative analysis of glycolysis.
• 
  Dietmar Schomburg: BRENDA, Enzyme Data for Metabolic pathways.
• 
  S. Lindek, R. Fritsch, Ernst H. K. Stelzer, José María Carazo, A. Engel, I. Fita, C. Henn, P. McNeil, David M. Shotton, J. Machtynger: Biolmage, the database of biological microscopy data.
• 
  Jean-Stéphane Varré, Jean-Paul Delahaye, Eric Rivals: The transformation distance: A dissimilarity measure based an movements of segments.
• 
  Knut Reinert, Hans-Peter Lenhof, Burkhard Morgenstern: An exact solution for the Segment-to-Segment multiple sequence alignment problem.
• 
  Antje Krause, Pierre Nicodème, Marc Rehmsmeier, Martin Vingron: Automatic clustering of large sequence databases.
• 
  Janet M. Thornton, Andrew C. R. Martin, Christine A. Orengo, Duncan Milburn, Roman A. Laskowski: [Invited Lecture] Protein Folds and Functions.
• 
  Mark Gerstein: [Invited Lecture] A Structural Census of Genomes: Comparing Bacterial, Eukaryotic, and Archaea Genomes in Terms of Protein Structure.
• 
  Manfred J. Sippl: [Invited Lecture] Fold Recognition: Techniques, Applications, and Pitfalls.
• 
  Alexander Hinneburg, Daniel A. Keim, Wolfgang Brandt: Detecting relationships between amino acid residue sequences and 3D protein structures based on a new class of rotamer libraries.
• 
  Finn Drabløs: Clustering of non-polar contacts in proteins.
• 
  Rolf Backofen, Sebastian Will: Structure prediction in an HP-type lattice with an extended alphabet.
• 
  Ruth Nussinov, Raquel Norel, Bilha Sandak, George Verbitsky, Haim J. Wolfson: [Invited Lecture] Structural motifs in the interior and on the surfaces of protein monomers and at protein-protein interfaces.
• 
  Thomas Seidl, Gabi Kastenmüller, Hans-Peter Kriegel: Similarity Search in 3D Protein Databases.
• 
  Matthias Rarey, Bernd Kramer, Thomas Lengauer: Docking of hydrophobic ligands with interaction-based matching algorithms.

Posters

Regulation

• 
  Niels Grabe, Ralf Hofestädt: A promoter model based on different combinations of binding sites.

Nucleotide-Structure

• 
  Dirk Evers, Michael Zuker: European Mfold Server.
• 
  Christoph Schneider, Jürgen Sühnel: Unrestrained molecular dynamics simulation of the FMN-RNA Aptamer complex.
• 
  Maria Brandl, Michael Meyer, Jürgen Sühnel: Quantum chemical ab initio study on an unusual water-mediated uracil-cytosine base pair.

Metabolic Pathways

• 
  Ralf Hofestädt, Manuela Prüß, Uwe Scholz, Holger Urban: The Metabolic Diseases DataBase (MDDB) - A Molecular Database Toolkit for the Detection of Inborne Errors.
• 
  Nicole Isermann, Wolfgang Wiechert: Efficient Computer algebraic Methods to analyze carbon labeling experiments.
• 
  Ignacio Sánchez-Valdenebro, Thomas Pfeiffer, Juan Carlos Nuño, Francisco Montero, Stefan Schuster: A structural approach to the analysis of metabolic networks illustrated with erythrocyte metabolism.

Genome Information & Sequence Data

• 
  Kaj Albermann, Jean Hani, S. Stocker, Alfred Zollner, Hans-Werner Mewes: The MIPS Yeast Genome Database.
• 
  Yvonne J. K. Edwards, Martin C. Frith, Greg Elgar, Martin J. Bishop: Theatre: A Novel Tool For The Comparative Investigation and Display of Evolutionary Diversity of Functional and Structural Features in DNA Sequences.
• 
  Greg Elgar, M. S. Clark, Yvonne J. K. Edwards, S. Meek, S. Smith, S. Umrania, S. Warner, WiIliams G, Martin J. Bishop: Characterization of The Compact Model Genome of The Japanese Puffer Fish (Fugu rubripes) Using A Cosmid Sequence Scanning Approach.
• 
  Klaus F. X. Mayer, Christine M. Schüller, Larry Parnell: A Statistical Analysis of the success of exon prediction algorithms on the Arabidopsis genome.
• 
  Uwe Ohler, Heinrich Niemann: Stochastic Language Models for Content Based DNA Sequence Classification.
• 
  Chandra M. Sarkar, J. Flavio R. Ortigao, Ulf Gyllensten, Anthony J. Brookes: HGBase, a database of intra-genic DNA sequence polymorphisms.
• 
  Ruben Schattevoy, J. Weber, André Rosenthal: High Throughput Sequence Annotation Server.
• 
  Normann Strack, Hans-Werner Mewes: An Object Oriented Approach to Data Handling and Semiautomatic Processing of cDNA Clones.
• 
  N. I. Akberova, A. Leontiev: Context-free method of pattern recognition in the genetic texts.
• 
  Erich Bornberg-Bauer: Computational approaches to identify Leucine Zippers.
• 
  Bastien Chevreux, Thomas Pfisterer, Thomas Wetter, Sándor Suhai: Computer assisted editing of genomic sequences.
• 
  Darrell Conklin, Terry Farrah: Protein motif recognition in DNA sequences containing indel errors.
• 
  Eivind Coward, Finn Drabløs: A method for detecting periodic patterns in sequences.
• 
  Henning Hermjakob, Claire O'Donovan, Maria Jesus Martin, Fiona Lang, Rolf Apweiler: SPTR: A comprehensive, non redundant and up-to-date view of the protein sequence world.
• 
  Andreas Kaps, Dirk Haase, Hans-Werner Mewes: Developing a groupware system for annotating Protein Sequences Using Object Oriented Technology.
• 
  Philip Lijnzaad, Katarzyna Kruszewska, Nicole Redaschi, Patricia Rodriguez-Tomé: A CORBA server for the EMBL Nucleotide Sequence Database: presentation of a first full implementation (EMCORBA v2).
• 
  Niels Mache, Paul Levi: GENIO/frame - Frame Shift Analysis and Sequencing Error Detection of Eukaryotic CDS.
• 
  Niels Mache, Paul Levi: GENIO/scan - EST Guided Identification of Genes in Human Genomic DNA.
• 
  Peter Sterk, Mary Ann Tuli: The EMBL Nucleotide Sequence Database at the European Bioinformatics Institute (EBI): Data Acquisition.
• 
  Mary Ann Tuli, Peter Sterk: The EMBL Nucleotide Sequence Database at the European Bioinformatics Institute (EBI): Sequence Similarity Searching & Database query/retrieval.
• 
  Olaf Weiss, Hanspeter Herzel: Property Codes in Sets of Protein Sequences.
• 
  Norman A. Doggett, Jonathan Longmire, Alexander Schliep, David C. Torney: Screening large clone libraries efficiently.

Sequence Alignment and Homology

• 
  Yvonne Kallberg, Hans Jörnvall, Bengt Persson: Implementing the Boyer-Moore Algorithm.
• 
  Burkhard Morgenstern: DIALIGN2: Improvement of the segment to segment approach to multiple sequence alignment.
• 
  Bengt Persson, Yvonne Kallberg, Erik Nordling, Jan-Olav Höög, Hans Jörnvall: Studies on the evolution of short-chain and medium-chain dehydrogenases/reductases.
• 
  Heiko A. Schmidt, Martin Vingron: pfastDNAml: Using Parallel Computing for Maximum Likelihood Phylogenetic Analysis.
• 
  Martin Ebeling, Peter Ernst, Mechthild Falkenhahn, Karl-Heinz Glatting, Agnes Hotz-Wagenblatt, A. Kühl, Ge Zhang, Sándor Suhai: EST Clustering at GENIUSnet, the German EMBnet node.

Protein Structure

• 
  Brigitte Altenberg, Gerrit Vriend: Molecular modelling and macromolecular visualisation with WHAT IF.
• 
  Sabine Dietmann, Cornelius Frömmel: Prediction of neighboring secondary structure of molecular patches in proteins by artificial neural networks.
• 
  Christoph Gille, Andrean Goede, Robert Preissner, Cornelius Frömmel: Atomic patch similarity as a criterion of evolutionary relationship between proteins.
• 
  Andrean Goede, Robert Preissner, Cornelius Frömmel: A procedure for superposition of two arbitrary atomic arrangements.
• 
  Robert Günther, Kerstin Möhle, Hans-Jörg Hofmann: Secondary structure formation in beta-Peptides.
• 
  Jukka V. Lehtonen, Konstantin A. Denessiouk, Mark S. Johnson: An application of genetic algorithm and parallel computing method to the protein structure comparison problem.
• 
  Oliver Leven, Dietmar Schomburg: Prediction of Protein Thermostability.
• 
  Qianning Liao, Jingchu Luo, Songping Liang, Xiaocheng Gu: A structural motif of three disulfide bridges and three beta strands in peptides.
• 
  Michael Meyer, Maria Brandl, Jürgen Sühnel: C-H..0 interactions in proteins and protein complexes.
• 
  Ulrich Schieborr: Dynamics in a time averaged stochastic dynamic simulation compared to essential dynamic methods applied to ribonuclease T1.
• 
  Fuad Abdallah, Olav Zimmermann, Oliver Leven, Sebastian Schneckener, Jan Kim: A Relational Macromolecular Structure Database.

Docking

• 
  Peter Krämer, Dietmar Schomburg: Use of local intermolecular interactions for the prediction of protein/protein binding sites.
• 
  Olav Zimmermann, Oliver Martin, Dietmar Schomburg: Geometric Docking of Transmembrane Structures.
• 
  Erik Nordling, Udo C. T. Oppermann, Hanns-Ulrich Marschall, Hans Jörnvall, Bengt Persson: Docking of bile acids to [gamma][gamma]alcohol dehydrogenase.
• 
  Robert Preissner, Andrean Goede, Cornelius Frömmel: Dictionary of Interfaces in Proteins (DIP). Data Bank of complementary molecular surface patches.
• 
  Michael Thormann, Hans-Jörg Hofmann: Docking experiences, AutoDock - a Case Study.

Others

• 
  Markus Fischer, Christoph Kaiser, Jürgen Pleiss, Rolf D. Schmid: Lipase Engineering Database.
• 
  Markus Kieninger, J. Gohrke, Chandra M. Sarkar, J. Flavio R. Ortigao, Thomas Kämpke: DoPrimer - a modular object oriented application and Java class library for the design of oligonucleotide primers.
• 
  Manuel Ruiz, Gérard Mennessier, Véronique Giudicelli, Denys Chaume, Marie-Paule Lefranc: IMGT/Collier de Perles, a LIGM-DB tool for Immunoglobulin and T-Cell Receptor 2D representations.
• 
  M. Schilling, Christoph Grunau, André Rosenthal: MethDB - a relational DNA-Methylation-Database.
• 
  Jingchu Luo, Christoph Sensen, Tin Wee Tan: Asia Pacific Bioinformatics Network.

last updated on Sat May 18 04:55:30 2013 by the dblp team
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