GCB 1997:
Kloster Irsee,
Bavaria,
Germany
Proceedings of the German Conference on Bioinformatics,
GCB '97,
Kloster Irsee,
Bavaria,
Germany,
September 1997 Oxford University Press
Invited Talks
- Ruben Abagyan, Serge Batalov, Timothy Cardozo, Maxim Totrov:
From fold recognition to flexible docking.
9-10
- Anthony Kerlavage:
Perspectives on analysis and annotation of bacterial, archeal, and eukaryotic genomes.
11-12
- Eugene V. Koonin, Roman L. Tatusov, David J. Lipman:
A natural taxonomy of gene families from complete genomes.
13-14
- Svante Pääbo:
Genetic variation as a means to reconstruct human history.
15
- Guorong Xu, Sing-Hoi Sze, Cheng-Pin Liu, Pavel A. Pevzner, Norman Arnheim:
Gene Hunting without Sequencing Genomis Clones: the "Twenty Questions" game with genes.
17
- David B. Searls:
Languages, Automata, and Macromolecules.
19
- Shoshana J. Wodak:
Molecular Systematics in Three Dimensions.
21
- André Goffeau:
Informatics, genomics, proteomics and phylogenetics by the yeast Eurofanatics.
23
Seleeted Papers
Genome Analysis
- Yan P. Yuan, Oliver Eulenstein, Martin Vingron, Peer Bork:
Towards detection of sequence orthologs.
25-30
- Thomas Dandekar, Katrin Beyer, Peer Bork, Vera Sonntag-Buck, Gilles Flouriot, Frank Gannon, W. Keller, Sonja Schreiber:
Systematic genomic screening and analysis of mRNA in the 5' and 3` untranslated region.
31-32
- Rainer Spang, Martin Vingron:
Statistics of large scale sequence searching.
33-35
- Karsten R. Heidtke, Steffen Schulze-Kremer:
Qualitative reasoning on gene control and reproduction demonstrated on lambda phage growth.
37-39
- Fredj Tekaia:
Whole genome camparisons: gene duplication and consenration in systematically sequenced organisms.
41-42
- Andrei Grigoriev, Alexander Levin, Hans Lehrach:
Distributed Computing in Genomic Mapping: Building Contigs on the Web.
43-51
- Alexander E. Kel, Andrey A. Ptitsyn, Vladimir N. Babenko, Sebastian Meier-Ewert, Hans Lehrach:
A genetic algorithm for designing gene family specific oligonucleotide sets used for hybridization. The G Protein-coupled receptor Protein superfamily..
53-55
- Alvis Brazma, Jaak Vilo, Esko Ukkonen:
Finding transcription factor binding site combinations in the yeast genome.
57-59
Evolution
Sequence Data Analysis
- Burkhard Morgenstern, Thomas Werner:
Dialign 1.0: Multiple alignment by Segment rather than by Position comparison.
69-71
- Brendan Mumey:
A Model and Method for Detecting Errors in Data Sets.
73-77
- S. Böhm:
Zinc Finger and zinc binding motifs in fhe yeast genome.
79-81
- Jürgen Kleffe, Klaus Hermann, W. Vahrson, Burghardt Wittig, Volker Brendel:
GeneGenerator- a flexible algorfthm for gene prediction.
83-86
- Dmitry A. Afonnikov, Y. V. Kondrakhin, Igor I. Titov, Nikolay A. Kolchanov:
Detecting direct correlations between positions in multiple alignments of amino acid sequences.
87-98
- L. Pickert, Ingmar Reuter, Frank Klawonn, Edgar Wingender:
Transcription regulation regions revealed by Signal detection and fuzzy clusterfng.
99-101
Structures
Posters
- Kaj Albermann, M. Bähr, Dmitrij Frishman, A. Gleißner, Jean Hani, Klaus Heumann, A. Maierl, Alfred Zollner, Hans-Werner Mewes:
The MIPS Yeast Genome Database.
121-122
- Rolf Backofen:
Using constraint programming for lattice protein folding.
123
- Uta Bohnebeck, Werner Sälter, Otthein Herzog, Manfred B. Wischnewsky, Dietmar Blohm:
An Approach to mRNA Signalstructure Detection through Knowledge Discovery.
125-126
- Alvis Brazma, Tomas P. Flores, Peter Maccallum, Alan J. Robinson:
Data Mining and Visualisation in Molecular Biology Databases.
127
- Christian Büschking, Chris Schleiermacher:
GeneView: A GenBank-Entry Visualisation Tool.
129-130
- Gareth Chelvanayagam, Lukas Knecht, Thomas Jenny, Steven A. Benner, Gaston H. Gonnet:
Structure Prediction with Combinatorial Distance Constraints.
131
- Peter De Rijk, Rupert De Wachter:
From alignment to RNA strucfure drawing.
133-134
- Bernd Drescher, J. Weber, Ruben Schattevoy, A. Knop, Hans-Peter Pohle, M. Schilling:
Automatic annotation of genomic date in a high throughput sequencing environment: I. Comparison of analysis programs.
135
- Ruben Schattevoy, A. Knop, Hans-Peter Pohle, M. Schilling, J. Weber, Bernd Drescher:
Automatic annotation of genomic date in a high throughput sequencing environment: II. Setup of distributed processing in a UNIX Cluster.
136
- Hans-Peter Pohle, Ruben Schattevoy, A. Knop, M. Schilling, J. Weber, Bernd Drescher:
Automatic annotation of genomic date in a high throughput sequencing environment: III. Genetic Data Management Tool (GDMT).
137
- A. Knop, Hans-Peter Pohle, Ruben Schattevoy, M. Schilling, J. Weber, Bernd Drescher:
Automatic annotation of genomic date in a high throughput sequencing environment: IV. System requirements for data storage and processing.
138
- J. Weber, A. Knop, Hans-Peter Pohle, Ruben Schattevoy, M. Schilling, Bernd Drescher:
Automatic annotation of genomic date in a high throughput sequencing environment: V. Exon Predictions with EST's and CDS's on Genomic Sequences.
139
- M. Schilling, A. Knop, Hans-Peter Pohle, Ruben Schattevoy, J. Weber, Bernd Drescher:
Automatic annotation of genomic date in a high throughput sequencing environment: VI. A Status Database.
140
- Antje Düsterhöft, B. Obermaier, T. Pohl, R. Wambutt, T. Altmann, Helmut Blöcker, H. Hoheisel, Hans-Werner Mewes, Annemarie Poustka:
Custom Megabase Sequencing of a Small Eucaryotic Genome in Germany.
141
- Dirk Evers, Robert Giegerich:
RNA Movies: Visualizing RNA secondary structure spaces.
143
- Karl-Heinz Glatting, Martin Ebeling, Agnes Hotz-Wagenblatt, Ge Zhang, Otto Ritter, Sándor Suhai:
The German EMBNET node GENIUSnet.
145-146
- Véronique Giudicelli, Denys Chaume, Gérard Mennessier, Hans-Helmar Althaus, Werner Müller, Julia G. Bodmer, Ansar Malik, Marie-Paule Lefranc:
IMGT: Tools for the management, the annotation, the analysis and the display of immunogenetics data.
147-148
- Jens Hanke, Peer Bork, Jens G. Reich:
Associative Data Base of Biomolecuiar Sequences.
149
- Meinhard Hasslacher, Christoph Kratky, Herfried Griengl, Helmut Schwab, Sepp D. Kohlwein:
Hydroxynitrile lyase from Hevea brasiliensis. Molecular characterization and mechanism of enzyme catalysis.
151
- Elena V. Ignatieva, Alexander E. Kel, Nikolay A. Kolchanov:
Lipid Metabolism Transcription Regulatory Regions Database (LM-TRRD).
153-154
- Alexander A. Kanapin, Vladimir A. Ivanov:
Relative rates of evolutionary changes in ORF1 proteins of nonviral retroelements: groups of phylogenetical relationship.
155-156
- Andreas Kaps, Hans-Werner Mewes:
Migrating to an Object-Oriented Protein Sequence Database.
157-158
- Markus Kieninger, Chandra M. Sarkar, J. Flavio R. Ortigao, Thomas Kämpke:
DOPE A web-based program system for the design of oligonucleotide primers.
159-160
- Ulf Leser, Robert Wagner, Hans Lehrach, Hugues Roest Crollius:
IXDB, an integrated database for genomic data of the Human X Chromosome.
161-162
- B. Nelissen, F. Van Leuven, Rupert De Wachter, A. Goffeau:
Classification of all putative permeases and other membrane multispanners of the Major Facilitator Superfamily encoded by the complete genome of Saccharomyces cerevisiae.
163
- Arnaud Perrin, Bernard Dujon:
Redundancy in the yeast genome: Paralogous gene sets and chromosome organization.
165-169
- Mikhail P. Ponomarenko, Julia V. Ponomarenko, Alexander E. Kel, Nikolay A. Kolchanov, N. Karas, Edgar Wingender, Heinz Sklenar:
Identification of the significant conformational features of functional sites in B-DNA.
171
- Patricia Rodriguez-Tomé, Carsten Helgesen, Philip Lijnzaad:
A CORBA server for the Radiation Hybrid Database.
173
- W. Schmidt:
Phylogeny reconstruction from hydrophobicity profiles of Proteins: An Information-theoretic approach.
175
- Armin O. Schmitt, Sebastian Meier-Ewert, Jörg Lange, Hans Lehrach:
Information theoretical design of sets of DNA oligomers for hybridization fingerprinting experiments.
177-178
- Sebastian Schneckener, Dietmar Schomburg:
Improvement of sequence-structure alignment quality by an empirical energy function.
179
- Michael Schöniger:
Adequacy of Evolutionary Models with Correlations and Rate Heterogeneity.
181
- Johannes Schuchhardt, H. Rystedt, Gisbert Schneider, Uwe Hobohm, Paul Wrede:
Automatic classification of Loop-Structures in Proteins by an Unsupervised Neural Network.
183-184
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