12. DNA 2006: Seoul, Korea

Chengde Mao, Takashi Yokomori (Eds.): DNA Computing, 12th International Meeting on DNA Computing, DNA12, Seoul, Korea, June 5-9, 2006, Revised Selected Papers. Lecture Notes in Computer Science 4287 Springer 2006, ISBN 3-540-49024-8

Molecular and Membrane Computing Models

Mihai Ionescu, Andrei Paun, Gheorghe Paun, Mario J. Pérez-Jiménez:
Computing with Spiking Neural P Systems: Traces and Small Universal Systems. 1-16
Tseren-Onolt Ishdorj:
Minimal Parallelism for Polarizationless P Systems. 17-32
Petr Sosík, Alfonso Rodríguez-Patón:
P Systems with Active Membranes Characterize PSPACE. 33-46
Florin Manea, Carlos Martín-Vide, Victor Mitrana:
All NP-Problems Can Be Solved in Polynomial Time by Accepting Networks of Splicing Processors of Constant Size. 47-57
Erzsébet Csuhaj-Varjú, Sergey Verlan:
Length-Separating Test Tube Systems. 58-70
Lucian Ilie, Roberto Solis-Oba:
Gene Assembly Algorithms for Ciliates. 71-82

Natasa Jonoska, Gregory L. McColm, Ana Staninska:
Spectrum of a Pot for DNA Complexes. 83-94
Stanislav Angelov, Sanjeev Khanna, Mirkó Visontai:
On the Complexity of Graph Self-assembly in Accretive Systems. 95-110
Lucian Ilie, Liviu Tinta, Cristian Popescu, Kathleen A. Hill:
Viral Genome Compression. 111-126

Lila Kari, Kalpana Mahalingam:
DNA Codes and Their Properties. 127-142
Max H. Garzon, Vinhthuy T. Phan, Sujoy Roy, Andrew Neel:
In Search of Optimal Codes for DNA Computing. 143-156
Suguru Kawashimo, Hirotaka Ono, Kunihiko Sadakane, Masafumi Yamashita:
DNA Sequence Design by Dynamic Neighborhood Searches. 157-171
Naoki Iimura, Masahito Yamamoto, Fumiaki Tanaka, Atsushi Kameda, Azuma Ohuchi:
Sequence Design for Stable DNA Tiles. 172-181
Michael Domaratzki:
Hairpin Structures Defined by DNA Trajectories. 182-194

Urmi Majumder, Sudheer Sahu, Thomas H. LaBean, John H. Reif:
Design and Simulation of Self-repairing DNA Lattices. 195-214
Yuliy M. Baryshnikov, Edward G. Coffman Jr., Boonsit Yimwadsana:
On Times to Compute Shapes in 2D Tile Self-assembly. 215-222
Sudheer Sahu, John H. Reif:
Capabilities and Limits of Compact Error Resilience Methods for Algorithmic Self-assembly in Two and Three Dimensions. 223-238
Thomas Keef:
A Mathematical Approach to Cross-Linked Structures in Viral Capsids: Predicting the Architecture of Novel Containers for Drug Delivery. 239-249

Sudheer Sahu, Bei Wang, John H. Reif:
A Framework for Modeling DNA Based Molecular Systems. 250-265
Bryan Wei, Zhengyu Wang, Yongli Mi:
Uniquimer: A de Novo DNA Sequence Generation Computer Software for DNA Self-assembly. 266-273
Masashi Shiozaki, Hirotaka Ono, Kunihiko Sadakane, Masafumi Yamashita:
A Probabilistic Model of the DNA Conformational Change. 274-285
Joseph Ibershoff, Jerzy W. Jaromczyk, Danny van Noort:
Simulations of Microreactors: The Order of Things. 286-297

Byoung-Tak Zhang, Joo-Kyung Kim:
DNA Hypernetworks for Information Storage and Retrieval. 298-307
William Thies, John Paul Urbanski, Todd Thorsen, Saman P. Amarasinghe:
Abstraction Layers for Scalable Microfluidic Biocomputers. 308-323
Don Jyh-Fu Jeng, Junzo Watada, Berlin Wu, Jui-Yu Wu:
Fuzzy Forecasting with DNA Computing. 324-336
Kiranchand V. Bobba, Andrew Neel, Vinhthuy T. Phan, Max H. Garzon:
"Reasoning" and "Talking" DNA: Can DNA Understand English? 337-349

Zuwairie Ibrahim, John A. Rose, Yusei Tsuboi, Osamu Ono, Marzuki Khalid:
A New Readout Approach in DNA Computing Based on Real-Time PCR with TaqMan Probes. 350-359
Clifford R. Johnson:
Automating the DNA Computer: Solving n-Variable 3-SAT Problems. 360-373
Rui Shogenji, Naoya Tate, Taro Beppu, Yusuke Ogura, Jun Tanida:
Local Area Manipulation of DNA Molecules for Photonic DNA Memory. 374-380

Atsushi Kameda, Masahito Yamamoto, Azuma Ohuchi, Satsuki Yaegashi, Masami Hagiya:
Unravel Four Hairpins! 381-392
John A. Rose, Ken Komiya, Satsuki Yaegashi, Masami Hagiya:
Displacement Whiplash PCR: Optimized Architecture and Experimental Validation. 393-403
Nevenka Dimitrova, Susannah Gal:
MethyLogic: Implementation of Boolean Logic Using DNA Methylation. 404-417
Masahito Yamamoto, Yutaka Kita, Satoshi Kashiwamura, Atsushi Kameda, Azuma Ohuchi:
Development of DNA Relational Database and Data Manipulation Experiments. 418-427
Ken Komiya, Satsuki Yaegashi, Masami Hagiya, Akira Suyama, John A. Rose:
Experimental Validation of the Statistical Thermodynamic Model for Prediction of the Behavior of Autonomous Molecular Computers Based on DNA Hairpin Formation. 428-438

Last update Tue Feb 14 03:53:52 2012 CET by the DBLP Team —

Data released under the ODC-BY 1.0 license — See also our legal information page