12. DNA 2006: Seoul, Korea
Chengde Mao, Takashi Yokomori (Eds.): DNA Computing, 12th International Meeting on DNA Computing, DNA12, Seoul, Korea, June 5-9, 2006, Revised Selected Papers. Springer 2006 Lecture Notes in Computer Science 4287 ISBN 3-540-49024-8
Molecular and Membrane Computing Models
- Mihai Ionescu, Andrei Paun, Gheorghe Paun, Mario J. Pérez-Jiménez: Computing with Spiking Neural P Systems: Traces and Small Universal Systems. 1-16
- Tseren-Onolt Ishdorj: Minimal Parallelism for Polarizationless P Systems. 17-32
- Florin Manea, Carlos Martín-Vide, Victor Mitrana: All NP-Problems Can Be Solved in Polynomial Time by Accepting Networks of Splicing Processors of Constant Size. 47-57
Complexity Analysis
- Stanislav Angelov, Sanjeev Khanna, Mirkó Visontai: On the Complexity of Graph Self-assembly in Accretive Systems. 95-110
Sequence and Tile Designs and Their Properties
- Max H. Garzon, Vinhthuy T. Phan, Sujoy Roy, Andrew Neel: In Search of Optimal Codes for DNA Computing. 143-156
- Suguru Kawashimo, Hirotaka Ono, Kunihiko Sadakane, Masafumi Yamashita: DNA Sequence Design by Dynamic Neighborhood Searches. 157-171
- Naoki Iimura, Masahito Yamamoto, Fumiaki Tanaka, Atsushi Kameda, Azuma Ohuchi: Sequence Design for Stable DNA Tiles. 172-181
- Michael Domaratzki: Hairpin Structures Defined by DNA Trajectories. 182-194
DNA Tile Self-assembly Models
- Urmi Majumder, Sudheer Sahu, Thomas H. LaBean, John H. Reif: Design and Simulation of Self-repairing DNA Lattices. 195-214
- Yuliy M. Baryshnikov, Edward G. Coffman Jr., Boonsit Yimwadsana: On Times to Compute Shapes in 2D Tile Self-assembly. 215-222
- Sudheer Sahu, John H. Reif: Capabilities and Limits of Compact Error Resilience Methods for Algorithmic Self-assembly in Two and Three Dimensions. 223-238
- Thomas Keef: A Mathematical Approach to Cross-Linked Structures in Viral Capsids: Predicting the Architecture of Novel Containers for Drug Delivery. 239-249
Simulator and Software for DNA Computing
- Bryan Wei, Zhengyu Wang, Yongli Mi: Uniquimer: A de Novo DNA Sequence Generation Computer Software for DNA Self-assembly. 266-273
- Masashi Shiozaki, Hirotaka Ono, Kunihiko Sadakane, Masafumi Yamashita: A Probabilistic Model of the DNA Conformational Change. 274-285
- Joseph Ibershoff, Jerzy W. Jaromczyk, Danny van Noort: Simulations of Microreactors: The Order of Things. 286-297
DNA Computing Algorithms and New Applications
- William Thies, John Paul Urbanski, Todd Thorsen, Saman P. Amarasinghe: Abstraction Layers for Scalable Microfluidic Biocomputers. 308-323
- Kiranchand V. Bobba, Andrew Neel, Vinhthuy T. Phan, Max H. Garzon: "Reasoning" and "Talking" DNA: Can DNA Understand English? 337-349
Novel Experimental Approaches
- Zuwairie Ibrahim, John A. Rose, Yusei Tsuboi, Osamu Ono, Marzuki Khalid: A New Readout Approach in DNA Computing Based on Real-Time PCR with TaqMan Probes. 350-359
- Clifford R. Johnson: Automating the DNA Computer: Solving n-Variable 3-SAT Problems. 360-373
- Rui Shogenji, Naoya Tate, Taro Beppu, Yusuke Ogura, Jun Tanida: Local Area Manipulation of DNA Molecules for Photonic DNA Memory. 374-380
Experimental Solutions
- Atsushi Kameda, Masahito Yamamoto, Azuma Ohuchi, Satsuki Yaegashi, Masami Hagiya: Unravel Four Hairpins! 381-392
- John A. Rose, Ken Komiya, Satsuki Yaegashi, Masami Hagiya: Displacement Whiplash PCR: Optimized Architecture and Experimental Validation. 393-403
- Nevenka Dimitrova, Susannah Gal: MethyLogic: Implementation of Boolean Logic Using DNA Methylation. 404-417
- Masahito Yamamoto, Yutaka Kita, Satoshi Kashiwamura, Atsushi Kameda, Azuma Ohuchi: Development of DNA Relational Database and Data Manipulation Experiments. 418-427
- Ken Komiya, Satsuki Yaegashi, Masami Hagiya, Akira Suyama, John A. Rose: Experimental Validation of the Statistical Thermodynamic Model for Prediction of the Behavior of Autonomous Molecular Computers Based on DNA Hairpin Formation. 428-438
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