8. DNA 2002: Sapporo, Japan

@proceedings{DBLP:conf/dna/2002,
  editor    = {Masami Hagiya and
               Azuma Ohuchi},
  title     = {DNA Computing, 8th International Workshop on DNA Based Computers,
               DNA8, Sapporo, Japan, June 10-13, 2002, Revised Papers},
  booktitle = {DNA},
  publisher = {Springer},
  series    = {Lecture Notes in Computer Science},
  volume    = {2568},
  year      = {2003},
  isbn      = {3-540-00531-5},
  bibsource = {DBLP, http://dblp.uni-trier.de}
}

Self-assembly and Autonomous Molecular Computation

• Phiset Sa-Ardyen, Natasa Jonoska, Nadrian C. Seeman:
  Self-assembling DNA Graphs. 1-9
  
• Dage Liu, John H. Reif, Thomas H. LaBean:
  DNA Nanotubes: Construction and Characterization of Filaments Composed of TX-tile Lattice. 10-21
  
• John H. Reif:
  The Design of Autonomous DNA Nanomechanical Devices: Walking and Rolling DNA. 22-37
  
• Daisuke Matsuda, Masayuki Yamamura:
  Cascading Whiplash PCR with a Nicking Enzyme. 38-46
  

Molecular Evolution and Application to Biotechnology

• John A. Rose, Mitsunori Takano, Akira Suyama:
  A PNA-mediated Whiplash PCR-based Program for In Vitro Protein Evolution. 47-60
  
• Subhayu Basu, David Karig, Ron Weiss:
  Engineering Signal Processing in Cells: Towards Molecular Concentration Band Detection. 61-72
  

Applications to Mathematical Problems

• Ji Youn Lee, Soo-Yong Shin, Sirk June Augh, Tai Hyun Park, Byoung-Tak Zhang:
  Temperature Gradient-Based DNA Computing for Graph Problems with Weighted Edges. 73-84
  
• Yoichi Takenaka, Akihiro Hashimoto:
  Shortening the Computational Time of the Fluorescent DNA Computing. 85-94
  
• Pilar de la Torre:
  How Efficiently Can Room at the Bottom Be Traded Away for Speed at the Top? 95-111
  
• Satoshi Kashiwamura, Masahito Yamamoto, Atsushi Kameda, Toshikazu Shiba, Azuma Ohuchi:
  Hierarchical DNA Memory Based on Nested PCR. 112-123
  
• Rana Barua, Janardan Misra:
  Binary Arithmetic for DNA Computers. 124-132
  
• Hubert Hug, Rainer Schuler:
  Implementation of a Random Walk Method for Solving 3-SAT on Circular DNA Molecules. 133-142
  
• Hee-Woong Lim, Ji-Eun Yun, Hae-Man Jang, Young-Gyu Chai, Suk-In Yoo, Byoung-Tak Zhang:
  Version Space Learning with DNA Molecules. 143-155
  
• In-Hee Lee, Ji-Yoon Park, Hae-Man Jang, Young-Gyu Chai, Byoung-Tak Zhang:
  DNA Implementation of Theorem Proving with Resolution Refutation in Propositional Logic. 156-167
  
• David Harlan Wood, Catherine L. Taylor Clelland, Carter Bancroft:
  Universal Biochip Readout of Directed Hamiltonian Path Problems. 168-181
  

Nucleic Acid Sequence Design

• Mirela Andronescu, Danielle Dees, Laura Slaybaugh, Yinglei Zhao, Anne Condon, Barry Cohen, Steven Skiena:
  Algorithms for Testing That Sets of DNA Words Concatenate without Secondary Structure. 182-195
  
• Russell J. Deaton, Junghuei Chen, Hong Bi, Max H. Garzon, Harvey Rubin, David Harlan Wood:
  A PCR-based Protocol for In Vitro Selection of Non-crosshybridizing Oligonucleotides. 196-204
  
• Satoshi Kobayashi, Tomohiro Kondo, Masanori Arita:
  On Template Method for DNA Sequence Design. 205-214
  
• Christine E. Heitsch, Anne Condon, Holger H. Hoos:
  From RNA Secondary Structure to Coding Theory: A Combinatorial Approach. 215-228
  
• Dan C. Tulpan, Holger H. Hoos, Anne Condon:
  Stochastic Local Search Algorithms for DNA Word Design. 229-241
  
• Dongmin Kim, Soo-Yong Shin, In-Hee Lee, Byoung-Tak Zhang:
  NACST/Seq: A Sequence Design System with Multiobjective Optimization. 242-251
  
• Russell J. Deaton, Junghuei Chen, Hong Bi, John A. Rose:
  A Software Tool for Generating Non-crosshybridizing Libraries of DNA Oligonucleotides. 252-261
  

Theory

• Tom Head, Dennis Pixton, Elizabeth Goode:
  Splicing Systems: Regularity and Below. 262-268
  
• Akihiro Takahara, Takashi Yokomori:
  On the Computational Power of Insertion-Deletion Systems. 269-280
  
• Mihai Ionescu, Carlos Martín-Vide, Andrei Paun, Gheorghe Paun:
  Unexpected Universality Results for Three Classes of P Systems with Symport/Antiport. 281-290
  
• Pierluigi Frisco, Sungchul Ji:
  Conformons-P Systems. 291-301
  
• Daniela Besozzi, Claudio Ferretti, Giancarlo Mauri, Claudio Zandron:
  Parallel Rewriting P Systems with Deadlock. 302-314
  
• Yasubumi Sakakibara, Hiroshi Imai:
  A DNA-based Computational Model Using a Specific Type of Restriction Enzyme. 315-325
  
• Maurice Margenstern, Yurii Rogozhin, Sergey Verlan:
  Time-Varying Distributed H Systems of Degree 2 Can Carry Out Parallel Computations. 326-336
  

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