DTMBIO 2009: Hong Kong, China

Keynote address

• Xiaohua Hu:
  Data mining in bioinformatics: challenges and opportunities. 1
  

Bio-data mining

• Bin Yang, Yu Peng, Henry C. M. Leung, Siu-Ming Yiu, Jing-Chi Chen, Francis Y. L. Chin:
  Unsupervised binning of environmental genomic fragments based on an error robust selection of l-mers. 3-10
  
• Younghoon Kim, Imhoi Koo, Byung Hwa Jung, Bong Chul Chung, Doheon Lee:
  Multivariate classification of urine metabolome profiles for breast cancer diagnosis. 11-18
  
• Isabel Segura-Bedmar, Mario Crespo, César de Pablo-Sánchez, Paloma Martínez:
  DrugNerAR: linguistic rule-based anaphora resolver for drug-drug interaction extraction in pharmacological documents. 19-26
  
• Chan-seok Jeong, Dongsup Kim:
  Linear predictive coding representation of correlated mutation for protein sequence alignment. 27-34
  
• Inho Park, Kwang H. Lee, Doheon Lee:
  Mining cancer genes with running-sum statistics. 35-42
  

Bio-text mining

• Hwanjo Yu, Taehoon Kim, Jinoh Oh, Ilhwan Ko, Sungchul Kim, Wook-Shin Han:
  Enabling multi-level relevance feedback on pubmed by integrating rank learning into DBMS. 43-50
  
• Ali Zeeshan Ijaz, Min Song, Doheon Lee:
  MKEM: a multi-level knowledge emergence model for mining undiscovered public knowledge. 51-58
  
• Jeong Woo Son, Seong-Bae Park:
  Learning word sense disambiguation in biomedical text with difference between training and test distributions. 59-66
  

Bio-data mining short papers

• Yang Cong, Takeyuki Tamura, Tatsuya Akutsu, Wai-Ki Ching:
  Efficient computation of impact degrees for multiple reactions in metabolic networks with cycles. 67-70
  
• Woo-Keun Chung, Hyong-Jun Kim, Hwan-Gue Cho:
  A web-based comparative visualization system for human endogenous RetroVirus(HERV) on whole genomes. 71-74
  
• Kam Swee Ng, Hyung-Jeong Yang, Sun-Hee Kim:
  Incremental non-gaussian analysis of microarray gene expression data. 75-78
  

Bio-text mining short papers

• Ikumi Suzuki, Kazuo Hara, Masashi Shimbo, Yuji Matsumoto:
  A graph-based approach for biomedical thesaurus expansion. 79-82
  
• Priyanka Sharad Prabhu, Shamkant B. Navathe, Stephen Tyler, Venu Dasigi, Neha Narkhede, Balaji Palanisamy:
  LITSEEK: public health literature search by metadata enhancement with external knowledge bases. 83-88
  
• Sarvnaz Karimi, Justin Zobel, Stefan Pohl, Falk Scholer:
  The challenge of high recall in biomedical systematic search. 89-92
  

Posters

• Younghoon Kim, Doheon Lee, Yongseong Cho, Sang Joo Lee:
  A large-scale gene network inference system for systems biology on supercomputing resources. 93-94
  
• Jeremias Murillo, Min Song:
  An outcome discovery system to determine mortality factors in primary care facilities. 95-96
  

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