DTMBIO 2008: Napa Valley, California, USA

Min Song, Doheon Kim, Luke Huan (Eds.): Proceeding of the 2nd International Workshop on Data and Text Mining in Bioinformatics, DTMBIO 2008, Napa Valley, California, USA, October 30, 2008. ACM 2008, ISBN 978-1-60558-251-1

Keynote I

Russ B. Altman:
Text mining for pharmacogenomics. 1-2

Keynote II

Alfonso Valencia:
Text mining in genomics and systems biology. 3-4

Bio-data mining

Brian Quanz, Meeyoung Park, Jun Huan:
Biological pathways as features for microarray data classification. 5-12
Waree Rinsurongkawong, Carlos Ordonez:
Microarray data analysis with pca in a dbms. 13-20
Hojung Nam, Ki Young Lee, Doheon Lee:
Identification of temporal association rules from time-series microarray data set: temporal association rules. 21-28
Sangwoo Kim, Doheon Lee:
Mining metastasis related genes by primary-secondary tumor comparisons from large-scale database. 29-36
André O. Falcão, Daniel Faria, António E. N. Ferreira:
Peptide programs: applying fragment programs to protein classification. 37-44

Bio-text mining

Jay Urbain, Ophir Frieder, Nazli Goharian:
Passage relevance models for genomics search. 45-52
Ankit Agrawal, Xiaoqiu Huang:
Pairwise statistical significance of local sequence alignment using multiple parameter sets. 53-60
Timur Fayruzov, Martine De Cock, Chris Cornelis, Véronique Hoste:
The role of syntactic features in protein interaction extraction. 61-68

Short papers

Jorge Amigo, Christopher Phillips, Antonio Salas:
Viability of in-house datamarting approaches for population genetics analysis of snp genotypes. 69-72
He Tan:
Knowledge-based gene symbol disambiguation. 73-76
Tatsuya Asou, Koji Eguchi:
Predicting protein-protein relationships from literature using collapsed variational latent dirichlet allocation. 77-80
Jane Synnergren, Björn Olsson, Jonas Gamalielsson:
A data integration method for exploring gene regulatory mechanisms. 81-84

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