6. CIBB 2009: Genoa, Italy

Tools for Bioinformatics

• Francesco Pappalardo, Mark D. Halling-Brown, Marzio Pennisi, Ferdinando Chiacchio, Clare Sansom, Adrian J. Shepherd, David S. Moss, Santo Motta, Vladimir Brusic:
  The ImmunoGrid Simulator: How to Use It. 1-19
  
• Piero Fariselli, Lisa Bartoli, Rita Casadio:
  Improving Coiled-Coil Prediction with Evolutionary Information. 20-32
  
• Floriana Esposito, Marenglen Biba, Stefano Ferilli:
  Intelligent Text Processing Techniques for Textual-Profile Gene Characterization. 33-44
  
• Lars Nilse, Marc Sturm, David C. Trudgian, Mogjiborahman Salek, Paul F. G. Sims, Kathleen M. Carroll, Simon J. Hubbard:
  SILACAnalyzer - A Tool for Differential Quantitation of Stable Isotope Derived Data. 45-55
  

Gene Expression Analysis

• Niccoló Bassani, Federico Ambrogi, Roberta Bosotti, Matteo Bertolotti, Antonella Isacchi, Elia Biganzoli:
  Non-parametric MANOVA Methods for Detecting Differentially Expressed Genes in Real-Time RT-PCR Experiments. 56-69
  
• Ana Carolina Wanderley-Nogueira, Nina da Mota Soares-Cavalcanti, Luis Carlos Belarmino, Adriano Barbosa-Silva, Ederson Akio Kido, Semiramis Jamil Hadad do Monte, Valesca Pandolfi, Tercílio Calsa-Junior, Ana Maria Benko-Iseppon:
  In Silico Screening for Pathogenesis Related-2 Gene Candidates in VignaUnguiculata Transcriptome. 70-81
  
• Vladimir Nikulin, Geoffrey J. McLachlan:
  Penalized Principal Component Analysis of Microarray Data. 82-96
  
• Pietro Zoppoli, Sandro Morganella, Michele Ceccarelli:
  An Information Theoretic Approach to Reverse Engineering of Regulatory Gene Networks from Time-Course Data. 97-111
  

New Perspectives in Bioinformatics

• Gilles Bernot, Jean-Paul Comet:
  On the Use of Temporal Formal Logic to Model Gene Regulatory Networks. 112-138
  
• Mario R. Guarracino, Adriano Nebbia:
  Predicting Protein-Protein Interactions with K-Nearest Neighbors Classification Algorithm. 139-150
  
• Nicoletta Castagnino, Lorenzo Tortolina, Roberto Montagna, Raffaele Pesenti, Anahi Balbi, Silvio Parodi:
  Simulations of the EGFR - KRAS - MAPK Signalling Network in Colon Cancer. Virtual Mutations and Virtual Treatments with Inhibitors Have More Important Effects Than a 10 Times Range of Normal Parameters and Rates Fluctuations. 151-164
  

Special Session on "Using Game-Theoretical Tools in Bioinformatics"

• Fioravante Patrone:
  Basics of Game Theory for Bioinformatics. 165-178
  
• Roberto Lucchetti, Paola Radrizzani:
  Microarray Data Analysis via Weighted Indices and Weighted Majority Games. 179-190
  

Special Session on "Combining Bayesian and Machine Learning Approaches in Bioinformatics: State of Art and Future Perspectives"

• Claudia Angelini, Italia De Feis, Viet Anh Nguyen, Richard C. van der Wath, Pietro Liò:
  Combining Replicates and Nearby Species Data: A Bayesian Approach. 191-205
  
• Marco Botta, Guido Negro:
  Multiple Sequence Alignment with Genetic Algorithms. 206-214
  

Special Session on "Data Clustering and Bioinformatics" (DCB 2009)

• Loredana Murino, Claudia Angelini, Ida Bifulco, Italia De Feis, Giancarlo Raiconi, Roberto Tagliaferri:
  Multiple Clustering Solutions Analysis through Least-Squares Consensus Algorithms. 215-227
  
• Sotiris K. Tasoulis, Vassilis P. Plagianakos, Dimitris K. Tasoulis:
  Projection Based Clustering of Gene Expression Data. 228-239
  
• Silvia Liverani, James Cussens, Jim Q. Smith:
  Searching a Multivariate Partition Space Using MAX-SAT. 240-253
  
• Aradhya V. N. Manjunath, Francesco Masulli, Stefano Rovetta:
  A Novel Approach for Biclustering Gene Expression Data Using Modular Singular Value Decomposition. 254-265
  

Special Session on "Intelligent Systems for Medical Decisions Support" (ISMDS 2009)

• Alexandru G. Floares:
  Using Computational Intelligence to Develop Intelligent Clinical Decision Support Systems. 266-275
  
• Ana S. Fernandes, Davide Bacciu, Ian H. Jarman, Terence A. Etchells, José Manuel Fonseca, Paulo J. G. Lisboa:
  Different Methodologies for Patient Stratification Using Survival Data. 276-290
  
• Anton Osokin, Dmitry Vetrov, Dmitry Kropotov:
  3-D Mouse Brain Model Reconstruction from a Sequence of 2-D Slices in Application to Allen Brain Atlas. 291-303
  
• Antonino Fiannaca, Salvatore Gaglio, Massimo La Rosa, Daniele Peri, Riccardo Rizzo, Alfonso Urso:
  A Proposed Knowledge Based Approach for Solving Proteomics Issues. 304-318
  

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