BIOSTEC BIOINFORMATICS 2011: Rome, Italy
Marco Pellegrini, Ana L. N. Fred, Joaquim Filipe, Hugo Gamboa (Eds.): BIOINFORMATICS 2011 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Rome, Italy, 26-29 January, 2011. SciTePress 2011 ISBN 978-989-8425-36-2
Full Papers
- Monther Alhamdoosh, Castrense Savojardo, Piero Fariselli, Rita Casadio: Disulfide Connectivity Prediction with Extreme Learning Machines. 5-14
- Virginio Cantoni, Riccardo Gatti, Luca Lombardi: Morphological Analysis of 3D Proteins Structure. 15-21
- Jan Schier, Bohumil Kovár: Automated Counting of Yeast Colonies using the Fast Radial Transform Algorithm. 22-27
- Esa Pitkänen, Juho Rousu, Mikko Arvas: Minimum Mutation Algorithm for Gapless Metabolic Network Evolution. 28-38
- Luna Dimitrio, Roberto Natalini, Luciano Milanesi: A Mathematical Model for the Enhanced Cytoplasmic Transport - How to Get (Faster) to the Nucleus. 39-46
- Gabriel Synnaeve, Katsumi Inoue, Andrei Doncescu, Hidetomo Nabeshima, Yoshitaka Kameya, Masakazu Ishihata, Taisuke Sato: Kinetic Models and Qualitative Abstraction for Relational Learning in Systems Biology. 47-54
- Guido Dell'Acqua, Alberto Maria Bersani: Bistability and the Complex Depletion Paradox in the Double Phosphorylation-dephosphorylation Cycle. 55-65
- Francesco Abate, Andrea Acquaviva, Elisa Ficarra, Enrico Macii: A New Latent Semantic Analysis based Methodology for Knowledge Extraction from Biomedical Literature and Biological Pathways Databases. 66-74
- Na'el Abu-halaweh, Amit Sabnis, Robert W. Harrison: Prediction of Regulatory sRNAs in Prokaryotes using Machine Learning Tools. 75-81
- Kalle Karhu, Juho Mäkinen, Jussi Rautio, Jorma Tarhio, Hugh Salamon: GAST, a Genomic Alignment Search Tool. 82-90
Short Papers
- Majid Masso, Iosif I. Vaisman: Modeling Cell Proliferation Activity of Human Interleukin-3 upon Single Residue Replacements. 93-101
- Michaël Vyverman, Joachim M. De Schrijver, Wim Van Criekinge, Peter Dawyndt, Veerle Fack: Accurate Long Read Mapping using Enhanced Suffix Arrays. 102-107
- Hunter N. B. Moseley, Richard M. Higashi, Teresa W.-M. Fan, Andrew N. Lane: Metabolic Modeling of Converging Metabolic Pathways - Analysis of Non-steady State Stable Isotope-resolve Metabolism of UDP-GlcNAc and UDP-GalNAc. 108-115
- Mario Salerno, Gianluca Susi, Alessandro Cristini: Accurate Latency Characterization for Very Large Asynchronous Spiking Neural Networks. 116-124
- Jyh-Jong Tsay, Bo-Liang Wu, Hou-Ji Dai: BioDBLink: Multi-level Data Matching for Automatic Generation of Cross Links among Biochemical Pathway Databases. 125-130
- Giulia Menconi, Giovanni Battaglia, Roberto Grossi, Nadia Pisanti, Roberto Marangoni: Inferring Mobile Elements in S. Cerevisiae Strains. 131-136
- Maria José Villanueva, Francisco Valverde, Oscar Pastor: Applying Conceptual Modeling to Alignment Tools One Step towards the Automation of DNA Sequence Analysis. 137-142
- Leonor Rib, Ricard Gavaldà, José Manuel Soria, Alfonso Buil: SalaboMiner - A Biomedical Literature Mining Tool for Inferring the Genetics of Complex Diseases. 143-148
- Anna Gambin, Slawomir Lasota, Michal Startek, Maciej Sykulski, Laurent Noé, Gregory Kucherov: Subset Seed Extension to Protein BLAST. 149-158
- Lyamine Hedjazi, Marie-Véronique Le Lann, Tatiana Kempowsky-Hamon, F. Dalenc, G. Favre: Improved Breast Cancer Prognosis based on a Hybrid Marker Selection Approach. 159-164
- Manuel de la Sen, Santiago Alonso-Quesada, Asier Ibeas: On Vaccination Controls for the SEIR Epidemic Model with Susceptible plus Immune Populations Tracking the Whole Population. 165-172
- Tomasz Gambin, Pawel Stankiewicz, Maciej Sykulski, Anna Gambin: Robustness of Exon CGH Array Designs. 173-182
- Anna Marabotti, Corrado Cirielli, Daniela Agnese D'Arcangelo, Claudia Giampietri, Francesco Facchiano, Antonio Facchiano, Angelo M. Facchiano: A Computational Strategy to Investigate Relevant Similarities between Virus and Human Proteins - Local High Similarities between Herpes and Human Proteins. 183-188
- Bráulio Roberto Gonçalves Marinho Couto, Marcelo Matos Santoro, Marcos Augusto dos Santos: Singular Value Decomposition (SVD) and BLAST - Quite Different Methods Achieving Similar Results. 189-195
- Gaurav Thareja, Vivek Kumar, Mike Zyskowski, Simon Mercer, Bob Davidson: PadeNA: A Parallel De Novo Assembler. 196-203
- Virginio Cantoni, Alessandro Gaggia, Riccardo Gatti, Luca Lombardi: Geometrical Constraints for Ligand Positioning. 204-209
- Stefan Sokoll, Klaus D. Tönnies, Martin Heine: Towards Fast 3D Nanoparticle Localization for Studying Molecular Dynamics in Living Cells. 210-215
- Matina Lakka, A. Desarti, Grigorios Chrysos, Euripides Sotiriades, Ioannis Papaefstathiou, Apostolos Dollas: Reconfigurable Computing IP Cores for Multiple Sequence Alignment. 216-221
- Alexander Tsouknidas, Nikolaos Michailidis, S. Savvakis, Kleovoulos Anagnostidis, K.-D. Bouzakis, G. Kapetanos: A High Accuracy CT based FEM Model of the Lumbar Spine to Determine its Biomechanical Response. 222-227
- Munib Ahmed, Ishfaq Ahmad, Samee Khan: A Theoretical Analysis of Scalability of the Parallel Genome Assembly Algorithms. 234-237
- Petr Simecek, Maria Dzur-Gejdosova, Irena Chvatalova, Jirí Forejt: Litter Effect in Mouse Phenotypic Studies. 238-243
- Corrado Giannantoni: Bio-informatics in the Light of the Maximum Ordinality Principle - The Case of Duchenne Muscular Dystrophy. 244-250
Posters
- Daniel Cadete, António dos Anjos, Hamid Shahbazkia, Richard Christen: CUDA Performance in DNA Analysis - Analysis of Cuda Architecture Performance in DNA Analysis. 253-257
- Evgeny O. Puchkov: Image Analysis Combined Fluorescence Microscopy - Examples of ImageJ Software Application in Yeast Studies. 258-261
- Lili Pei, Shujia Qin, Wei Ding, Lei Miao, Hongyi Li: Chaos Level Investigation of Centre-of-pressure Single-step Displacement in Static and Dynamic Visual Conditions. 262-265
- Matthijs van der Kroon, Ignacio Lereu Ramirez, Ana M. Levin, Oscar Pastor, Sjaak Brinkkemper: Mutational Data Loading Routines for Human Genome Databases - The BRCA1 Case. 266-269
- Rafal Wcislo: Interactive Visualization Tool for Tumor Growth Simulations. 270-273
- Charalampos S. Kouzinopoulos, Panagiotis D. Michailidis, Konstantinos G. Margaritis: Experimental Results on Multiple Pattern Matching Algorithms for Biological Sequences. 274-277
- Jaroslav Albert, Marianne Rooman: Modeling Delays in State Transition of a Bistable Genetic Switch under the Influence of Extrinsic Noise. 278-282
- Hang Zettervall, Elisabeth Rakus-Andersson, Henrik Forssell: The Mamdani Controller in Prediction of the Survival Length in Elderly Gastric Patients. 283-286
- Badia Dandach-Bouaoudat, Farouk Yalaoui, Lionel Amodeo, Françoise Entzmann: Optimization of a Solid State Fermentation based on Radial Basis Function Neural Network and Particle Swarm Optimization Algorithm. 287-292
- Alberto Calvi, Pietro Lovato, Simone Marchesini, Barbara Oliboni, Massimo Delledonne, Alberto Ferrarini: Microarray System - A System for Managing Data Produced by DNA-microarray Experiments. 293-296
- José C. Calvo, Julio Ortega, Mancia Anguita, Javid Taheri, Albert Y. Zomaya: A Method to Improve the Accuracy of Protein Torsion Angles. 297-300
- James T. Murphy, Ray Walshe, Marc Devocelle: A Computational Modelling Approach to Explore the Anti-microbial Pro-drug Delivery System. 301-308
- András Hartmann, Susana Vinga, João M. Lemos: Unified Modeling of Several Perturbation Experiments in Systems Biology - A Case Study on the Glucose Uptake of Lactococcus Lactis. 309-312
- Bráulio Roberto Gonçalves Marinho Couto, Marcelo Matos Santoro, Marcos Augusto dos Santos: Unrevealing Biological Process with Linear Algebra - Extracting Patterns from Noisy Data. 313-317
- Giulia Paciello, Andrea Acquaviva, Elisa Ficarra, M. A. Deriu, A. Grosso, Enrico Macii: Binding Free Energy Calculation via Molecular Dynamics Simulations for a miRNA: mRNA Interaction. 318-321
- Juan Pablo Costa, Horacio Castellini, Patricia Risso, Bibiana Riquelme: Texture Analysis of Milk Protein Gels using Digital Image Analysis. 322-325
- Sion Hannuna, Timo Kunkel, Nantheera Anantrasirichai, Nishan Canagarajah: Colour Correction for Assessing Plant Pathology using Low Quality Cameras. 326-331
Special Session on Metagenomic Sequence Data Analysis
Full Papers
- Peter E. Larsen, Frank Collart, Folker Meyer, Jack A. Gilbert: Predicted Relative Metabolomic Turnover - Predicting Changes in the Environmental Metabolome from the Metagenome. 337-345
- Victor V. Solovyev, Asaf A. Salamov, Igor A. Seledtsov, Denis Vorobyev, Alexander G. Bachinsky: Automatic Annotation of Bacterial Community Sequences and Application to Infections Diagnostic. 346-353
Short Papers
- Tatiana A. Tatusova: Infrastructure for Metagenome Data Management and Analysis. 357-362
- Folker Meyer, Nikos Kyrpides: Proposal for Open Discussion - Informatics Challenges for Next Generation Sequencing Metagenomics Experiments. 363-366
- Samuel Patient, Maria Jesus Martin: Annotating UniProt Metagenomic and Environmental Sequences in UniMES. 367-368
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last updated on 2013-06-18T214307 by the dblp team