BIOCOMP 2008:
Las Vegas,
Nevada,
USA
Hamid R. Arabnia, Mary Qu Yang, Jack Y. Yang (Eds.):
International Conference on Bioinformatics & Computational Biology, BIOCOMP 2008, July 14-17, 2008, Las Vegas Nevada, USA, 2 Volumes.
CSREA Press 2008, ISBN 1-60132-055-8 
Sequence and Structure Alignment of Macro Molecules
Biomolecular Pathways and System Biology
- Babak Shahbaba, Eva Prenosil, Anjali Jain, Sylvia K. Plevritis:
A modified Dirichlet process mixture model for clustering phosphopeptides based on their response to anti-cancer drug perturbation.
17-22
- Li Chen, Jianhua Xuan, Rebecca B. Riggins, Yue Joseph Wang, Eric P. Hoffman, Robert Clarke:
Identification of Condition-specific Regulatory Modules by Multi-level Motif and mRNA Expression Analysis.
23-28
- Jens Lichtenberg, Edwin Jacox, Mary Qu Yang, Laura Elnitski, Lonnie R. Welch:
Word-Based Characterization of the Bidirectional Promoters from the Human DNA-Repair Pathway.
29-33
- Jens Lichtenberg, Paul Morris, Klaus Ecker, Lonnie R. Welch:
Discovery of Regulatory Elements in Oomycete Orthologs.
34-38
- Anke Meyer-Bäse, Fabian J. Theis:
Stochastic Stability Analysis of the Heat Shock Response in E. Coli.
39-42
- Chun-Ju Chang, Pen-Hui Yin, Chun-Hui Wang, Chin-Wen Chi, Yau-Huei Wei, Hsin-Chen Lee:
Mitochondrial Stress-induced Genes and Pathways Changes in Human Hepatoma Cells.
43-49
- Minseo Park:
An Efficient Intelligent Binary Tree for Alternative Splice Site Detection.
50-54
- Frank Emmert-Streib, Andre Ribeiro:
Optimize Observational Time Points to Maximize the Inferability of Gene Networks.
55-60
- Anthony Palumbo, Jack Schryver, Susan Pfiffner, Terence Marsh, Craig Brandt:
Relating Microbial Community Structure to a Dominant Environmental Variable in a Complex Environment: An Example from a Chromium Contaminated Site.
61-67
- Kenneth Sundberg, Daniel Ence, Daniel Wilcox, Quinn Snell, Mark J. Clement:
Genomic Scale Reconstruction of Gene Regulatory Networks from Microarray Data.
68-71
Phylogenetic Reconstruction and Molecular Evolution
- Roger A. Craig, Keyur Malaviya, Krishna Balasubramanian, Li Liao:
Inferring functional linkage from residue level co-evolution information.
75-80
- Kenneth Sundberg, Hyrum Carroll, Quinn Snell, Mark J. Clement:
Incomparability of Results Between Phylogenetic Search Programs.
81-84
- Pinghao Wang, Bing Bing Zhou, Chen Wang, Zhen Zhao, Albert Y. Zomaya:
An Integrative Approach to Phylogenetic Inference.
85-90
- Xin Liu, Li-Mei Zhang, Jun Yin, Ya-Pu Zhao:
Major factors of protein evolution revealed by eigenvalue decomposition analysis.
91-97
- Chen-Hui Lin, Justie Juan:
Computing the Mixture Distance Between Mixture Trees.
98-103
- Pinghao Wang, Bing Bing Zhou, Chen Wang, Pang Bo, Albert Y. Zomaya:
A Multi-criteria Phylogenetic Reconstruction Method.
104-110
- Rishi Mukhopadhyay, John Rose:
Does Nucleotide Compositional Bias Explain Amino Acid Usage in Viral Genomes?.
111-115
- Liviu Badea:
Tracking the Dimensional Evolution of Gene Expression Biclusters.
116-121
- Sridhar Ramachandran, Travis E. Doom:
Validation of the Human Alu phylogeny: a whole-genome analysis.
122-128
Gene Expression and Data Analysis
- Nan Mei, Mugimane G. Manjanatha, Mizuo Azuma, Lea P. McDaniel, Stacey L. Dial, Jo Tseng, Wayne Liao, Lei Guo:
Liver Gene Expression Profile of Mice Treated with Acrylamide in Drinking Water.
131-137
- Tamanna Howlader, Yogendra P. Chaubey:
Bivariate Estimator for cDNA Microarray Images Using Complex Wavelets.
138-144
- Humberto Ortiz-Zuazaga, Tim Tully, Oscar Moreno:
Majority Logic Decoding for Probe-level Microarray Data.
145-150
- Hossam S. Sharara, Mohamed A. Ismail:
BISOFT: A Semi-Fuzzy Approach For BiClustering Gene Expression Data.
151-157
- Sapana Kumari, Huann-Sheng Chen:
PC-Relief-F Feature Filtering Algorithm: Application and Utilization in Selecting Informative Genes from Microarray Data.
158-163
- Hong Zhou, Xiao Zeng, Joseph Manthey:
Discoveries in shRNA Design.
164-169
- Edward Salinas, Amitava Karmaker:
Analysis of Correlations between Genes and Triads of Transcription Factors Using Microarray Expression Profiles.
170-174
- Vinhthuy Phan, E. Olusegun George, Quynh T. Tran, Thomas R. Sutter:
Toward a Combinatorial Approach to the Sample Size Problem in Multiple-treatment Microarray Studies.
175-181
- Anthony Bagnall, Simon Moxon, David J. Studholme, Vincent Moulton:
Time Series Data Mining Algorithms for Identifying Short RNA in Arabidopsis thaliana.
182-188
Gene Identification and Clustering
- Ting Gong, Jianhua Xuan, Rebecca B. Riggins, Yue Joseph Wang, Eric P. Hoffman, Robert Clarke:
Exploring Transcriptional Modules Through Integrative Gene Clustering Guided by Transcription Factor Binding Information.
191-197
- Jian Song, Jason D. Gans, Murray Wolinsky, Po-E Li, Emily Curd, Chris Detter, Hong Cai:
Algorithms for Designing the Minimal Set of Multiplexed Degenerate Universal Tagged Primers for RNA Virus Detection.
198-202
- Sing-Wu Liou, Yin-Fu Huang:
Mining Intronic Sequence Features of Splice Sites with Depth-Breadth Fused Codon Analyses.
203-209
- Muhammed Al-Mulhem:
Stochastic Context Free Grammar for RNA Modeling: An Overview.
210-213
- John Rose, Achraf El Allali:
Mutual Information Measure for Distinguishing Coding and Non-Coding DNA Sequences.
214-219
- Kumar Abhishek, Harish Karnick:
GO Based Hierarchical Framework for Inference of Gene Regulatory Networks.
220-225
- Xuan Vinh Nguyen:
Gene Clustering on the Unit Hypersphere with the Spherical K-Means Algorithm: Coping with Extremely Large Number of Local Optima.
226-233
- Padmanabhan Mahadevan, Donald Seto:
Data Mining Pathogen Genomes Using GeneOrder and CoreGenes: Gene Order, Synteny, and Proteomes.
234-240
- Paul Dan Cristea, Rodica Tuduce:
Use of Nucleotide Genomic Signals in the Analysis of Variability and Inserts in Prokaryote Genomes.
241-247
- Uma Devi Tatavarthi, V. Nageswara Rao Padmanabhuni, Allam Appa Rao:
Promoter Prediction using Horspool's Algorithm.
248-250
- Devi Golaganilavanya, Rao Allamappa, A. Damodaram, G. R. Sridhar, G. Jaya Suma:
Fuzzy C-Means Algorithm for Clustering Protein Sequences.
251-255
- T. Sobha Rani, Raju S. Bapi:
E.coli Promoter Recognition Through Wavelets.
256-262
Medical Diagnostic Tools and Methods
- Igor Szczyrba, Martin Burtscher, Rafal Szczyrba:
On the Role of a Nonlinear Stress-Strain Relation in Brain Trauma.
265-271
- Giovanni Rinaldi, Mike Martin, Massimo Busuoli:
A Federative Approach For a Virtual Community In Elderly Care: A Different Way In ECare.
272-278
- Tai Nguyen-Ky, Peng (Paul) Wen, Yan Li:
Modified Detrended Fluctuation Analysis Method in Depth of Anesthesia Assessment Application.
279-284
- Roman Andrushkiw, Dmitry Klyushin, Lyudmila Ostapchenko, Yuriy Petunin, Ivan Sirenko, Natalya Boroday:
Combined Correlation-Proximity Test for Breast Cancer and Fibroadenomatosis.
285-288
- Jon Plumley, Richard Gatward, Alison Todman, Raouf N. Gorgui-Naguib, Mark K. Bennett:
Observation and Reporting Experiment Undertaken in the Development of an Image Desription Language for the Reporting by Pathologists of the Grading of Cancers.
289-293
- Sally Atkinson, Babak Akhgar, Jawed I. A. Siddiqi, Alicia Grudz, Alexandra Ihatowicz, Massimo Gulisano, Lorenzo Memeo, Peter Scriven:
MATCH: A Decision Support System for Integration of Biomedical Data.
294-297
- Paola Lecca:
Stochastic pi-Calculus Models of the Molecular Bases of Parkinson's Disease.
298-304
- Silvana Cunha Costa, Benedito G. Aguiar Neto, Joseana M. Fechine:
Laryngeal Pathology Detection by LPC and LPC-based Cepstral Analysis.
305-310
- Gustavo Adolfo Martinez Chavez:
Recirculation in Vascular Access for Hemodialysis Treatment by Employ the on_line Mesuring Sytem of Urea in Blood.
311-314
- Uma T. Shankavaram, Sudhir Varma, David W. Kane, Margot Sunshine, Krishna Chary, William C. Reinhold, John N. Weinstein:
CellMiner: A Database Tool for the NCI-60 Cancer Cell Lines.
315-323
- Roman Andrushkiw, Yuriy Petunin, Dmitry Klyushin, Yulia Lozovskaya, Andrey Romanov:
Correlation Algorithm for Cytogenetic Method of Breast Cancer Diagnosis.
324-327
- Loretta Ichim, Radu Dobrescu, Catalin Vasilescu:
Two Dimensional Modeling and Computer Simulation of Tumor Growth.
328-333
- Tapas Kumar Basak, Subramani Murugappan, Velanganny Cyrilraj, Thiruvengadam Ramanujam, Thavasi anantham Ravi:
Data Mining of Capacitance Relaxation Phenomena in classifying Breast Cancer Cell.
334-339
- Gillian Jones, Gillian Pearce, Matthew Smith:
Using Simple Computer Exercises to Assist in the Rehabilitation of Stroke Patients : A Prototype.
340-344
- El Menouar Salah, Braham Salah, Abd Elkrim Salah:
Vital Medical Imaging Multimode Cyto-Histo-Anatomical Computing Systems.
345-351
- Keo-Sik Kim, Yang Su An, Jeong-Hwan Seo, Chul-Gyu Song:
An algorithm for estimation of abdominal pressure by electromyography.
352-357
Application of Engineering Techniques and Mathematics in Medicine and Biology
- Jingwei Zhang, Layne T. Watson, Masha Sosonkina, Yang Cao:
Analysis of Goldbeter-Koshland Switch Using the Chemical Master Equation.
361-367
- Getachew K. Befekadu, Mahlet G. Tadesse, Habtom W. Ressom:
Probabilistic-Based Mixture Regression Models for Multi-Class Alignment of LC-MS Data.
368-373
- M. L. D. Ponce, J. Ding, Mohammad H. N. Tabrizi:
Identifying Factors that Improve the Predictive Quality of BMI for Health Status.
374-378
- Haihui Wang, Yijun Chang, Pan Du:
Application of Framelet Transform to the MS-based Proteomics Data Preprocessing.
379-382
- Yung-Hsing Peng, Chang-Biau Yang, Chiou-Ting Tseng, Chiou-Yi Hor:
Efficient Sparse Dynamic Programming for the Merged LCS Problem.
383-388
- Xi Wang, D. W. Kim, Kil To Chong:
Evaluation Of The Deformity Of Cleft Nose Based On Statistical And Neural Network.
389-395
- Alessandro Brawerman, Mauricio Perretto:
A Group Monitoring Wireless System for Health Care Monitoring.
396-400
- Yuji Zhang, Jianhua Xuan, Benildo de los Reyes, Robert Clarke, Habtom W. Ressom:
Reverse Engineering Module Networks by PSO-RNN Hybrid Modeling.
401-407
- Omid Ghasemalizadeh, Mohammad Reza Mirzaee, Bahar Firoozabadi, Kamran Hassani:
Exact Modeling of Cardiovascular System Using Lumped Method.
408-417
- Xinyu Que, Fa Zhang, Shengzhong Feng, Bo Yuan, Zhiyong Liu:
An improvement method based on OrthoMCL by adding the domain information.
418-423
- Andrzej Kudlicki, Maga Rowicka, Zbyszek Otwinowski:
Significance-Testing of Periodogram for Short Time Series.
424-430
- Tae-Hyuk Ahn, Yang Cao, Layne T. Watson:
Stochastic Simulation Algorithms for Chemical Reactions.
431-436
- Renat A. Sultanov, Dennis Guster, Brent Engelbrekt, Richard Blankenbecler:
A Full Dimensional Numerical Study of Pulsatile Human Blood Flow in Aortic Arch.
437-443
- Marios M. Hadjiandreou, Raúl Conejeros, Vassilios S. Vassiliadis, D. Ian Wilson:
Long-Term HIV Dynamics: Mathematical Modeling and Optimal Control.
444-450
- Frank M. You, Ming-Cheng Luo, Yong Qiang Gu, Gerard R. Lazo, Jan Dvorak, Olin D. Anderson:
An Algorithm for Discrimination of Multiple-Fragment Peaks in Capillary Fingerprinting Chromatograms.
451-456
- Tetsuya Hirotomi, Yasutomo Hosomi:
Gait Analysis on the Use of Four-castered Walker and Elderly-simulation Suit.
457-463
- Iraj Derakhshan:
The Slower Side Marches to a Distant Drummer: A Fresh Look at the Results of a Paper and Pencil Test for Laterality of Motor Control.
464-469
- Iraj Derakhshan:
Right Handers Breathe with Left Hemisphere: Handedness and the Risk of Sudden Death in Hemispheric Stroke in NASCET.
470-477
- Lizhen Yang, Zhaobin Wang, Yide Ma, Feiyan Cheng, Qingxiang Gao:
Extraction of Interested Objects in Botanic Somatic Embryo Images.
478-482
- Keo-Sik Kim, Jeong-Hwan Seo, Chul-Gyu Song:
Classification of normal and abnormal knee joint using back-propagation neural network.
483-488
- Chul-Gyu Song, Keo-Sik Kim, Jeong-Hwan Seo:
Comparison of acoustical parameters of knee sound according to pathological condition for pattern extraction.
489-493
- Chul-Gyu Song, Keo-Sik Kim, Yang Su An, Jeong-Hwan Seo:
Optimum electrode configuration to estimate abdominal pressure using regression analysis of bio-impedance signal.
494-499
Bioinformatics and Medical Informatics
- John C. Mazziotta, Arthur W. Toga:
Computational Neuroinformatics - Basic Science and Clinical Applications.
503-512
- Roxanne Tapia, Gary Xie, Ravi D. Barabote, Gerry Myers, Thomas S. Brettin:
Streptococcus in Toto: A Species-specific Comparative Analysis Website Prototype.
513-517
- Jingao Dong, Srinivas Iyer, Christy Ruggiero, Murray Wolinsky, Jian Song:
Bioinformatic Analysis of Iron Acquisition Systems in Bacillus anthracis.
518-526
- Jonathan L. Lustgarten, Shyam Visweswaran, Himanshu Grover, Vanathi Gopalakrishnan:
An Evaluation of Discretization Methods for Learning Rules from Biomedical Datasets.
527-532
- Mukesh Doble:
Mathematical Analysis of EEG Signals of Patients with Prion Dsease.
533-537
- Fei Xia, Yong Dou, Jiaqing Xu:
Fine-Grained Parallel Zuker Algorithm Accelerator with Storage Optimization on FPGA.
538-544
- Xiong Liu, Hassan A. Karimi:
Semantic Discovery of Protein Web Services.
545-550
- Frank Drews, Eric Petri, Jens Lichtenberg, Lonnie R. Welch:
Scalable Parallel Word Search in Multi-Core/Multiprocessor Systems.
551-557
- Elena S. Peterson, Eric Stephan, Abbie Corrigan, Roberto D. Lins, Thereza A. Soares, Randy Scarberry, Stuart Rose, Leigh Williams, Canhai Lai, Terence Critchlow, Tjerk P. Straatsma:
Northwest Trajectory Analysis Capability: A Platform for Enhancing Biophysics Analysis.
558-562
- Kai-Chieh Yang, Ming-Chi Jhuang, Chun-Shun Tseng, Jhan-Syuan Yu, Jung-Hua Wang:
Improved Segmentation Based on Probabilistic Labeling.
563-567
- Syed Omair Hasan, Shmuel Rotenstreich:
An Organizational Framework of Personal Health Records for Social Networks.
568-572
- Carol Lushbough, Volker Brendel:
An Overview of the BioExtract Server - a Distributed, Web Based Application for Bioinformatic Analysis.
573-578
- Elena Sini, Paolo Locatelli, Nicola Restifo:
Integrated ICT approach to improve clinical processes in healthcare organizations: a case study.
579-586
- Hiroshi Kamabe:
Combinations of Context-Free Shifts and Shifts of Finite Type.
587-593
- Tapas Kumar Basak, Thavasi Anandam Ravi, Velankanni Cyrilraj, Gurusamy Gunansekaran, Thiruvenngadam Ramanujam:
Bioinformatics for Leukemia(MDS) Associated with Bone Marrow Depression.
594-600
- Pasquale Capasso, Antonio Picariello:
BioInView: Integration and Querying of Heterogeneous Biological Data Sources.
601-607
- Carol Lushbough, Jon Duvick, Qunfeng Dong, Douglas Jennewein, Joe Reynoldson, Volker Brendel:
TableMaker: An ad hoc Query Tool for Relational Databases.
608-611
- Kuha Mahalingam, Omar Bagasra:
Bioinformatics Tools: Searching for Markers in DNA/RNA Sequences.
612-615
Structure and Dynamics of Macro Molecules
- Alireza Hadj Khodabakhshi, Ján Manuch, Arash Rafiey, Arvind Gupta:
Inverse protein folding in 3D hexagonal prism lattice under HP model.
619-625
- Sara Rahmati, Janice I. Glasgow:
Noise Tolerance of the Universal Similarity Metric Applied to Protein Contact Map Comparison in Two Dimensions.
626-632
- Rishi Mukhopadhyay, Paul Shealy, Homayoun Valafar:
Protein Fold Family Recognition From Unassigned Residual Dipolar Coupling Data.
633-638
- Oyun-Erdene Namsrai, Garmaa Dangaasuren, Keun Ho Ryu:
A new algorithm for RNA secondary structure prediction and fast method for prediction of simple H-type pseudoknots.
639-645
- Paul Shealy, Rishi Mukhopadhyay, Stephen Smith, Homayoun Valafar:
Automated Assignment of Backbone Resonances Using Residual Dipolar Couplings Acquired from a Protein with Known Structure.
646-652
- Ivana Mihalek:
Blueprint for an Algorithm for Conformational Transformation Tolerant Search Through a Database of Protein Structures.
653-659
- Mark A. Olson, In-Chul Yeh, Michael S. Lee:
Molecular Dynamics Simulations of Folding and Insertion of the Ebola Vrus Fusion Peptide into a Membrane Bilayer.
660-665
- Reetal Pai, James C. Sacchettini, Thomas R. Ioerger:
Analysis of Protein-Ligand Interactions Using Localized Stereochemical Features.
666-673
- Zaixin Lu, Zhiyu Zhao, Sergio Garcia, Bin Fu:
New Algorithm and Web Server for Finding Proteins with Similar 3D Structures.
674-680
- Sandeep Deshmukh, Aniket Dalal, Pramod Wangikar:
GIPSCo: A Method for Comparison of Protein Structures Based on Geometric Invariants.
681-687
- Tarek Gharib, Ahmed Salah, Ibarhim El Henawy, Abdel-Badeeh M. Salem:
Protein Structure Searching using Suffix Arrays.
688-691
- Shih-Yen Ku, Yuh-Jyh Hu:
Using Protein Structural Alphabet to Characterize Local Structure Features.
692-697
Metablomics,
Proteomic and Protein Function
- Harold J. Drabkin, Cecilia N. Arighi, Cathy H. Wu, Judith A. Blake:
Functional Annotation of Protein Isoforms and Modified Forms.
701-707
- Christopher M. Frenz:
The Role of Protein Electrostatics in Facilitating the Catalysis of DEAD-box Proteins.
708-712
- Zhiwen Yu, Zhongkai Deng, Hau-San Wong:
K-Nearest Neighbor Classifier Ensemble for Prediction of Phosphorylation Sites.
713-717
- Hongbo Zhou, Qiang Shawn Cheng, Mehdi R. Zargham:
Prediction of Protein Function Using Graph Container and Message Passing.
718-723
- Changjiang Zhang, Wensheng Shen, Kimberly Forsten-Williams, Michael Fannon, Jun Zhang:
Simulation of FGF-2 Binding with Receptors on Cell Surface on the Wall in a Bioreactor System.
724-727
- Omar Gaci, Stefan Balev:
Proteins: From Structural Classification to Amino Acid Interaction Networks.
728-734
- Gregory Martyn, Christopher M. Frenz:
ESPSim: A JAVA Application for Calculating Electrostatic Potential Map Similarity Scores.
735-737
- Elizabeth Timko, Paul Shealy, Michael Bryson, Homayoun Valafar:
Minimum Data Requirements and Supplemental Angle Constraints for Protein Structure Prediction with REDCRAFT.
738-744
Algorithms and Models + Tools + Intelligent Drug Design
- Tiago Antao, Ian M. Hastings, Peter McBurney:
Ronald: A Domain-Specific Language to Study the Interactions Between Malaria Infections and Drug Treatments.
747-752
- Shih-Fang Lin, Ke-Ting Xiao, Chung-Cheng Chiu, Von-Wun Soo:
Classifying Proteins Related to Adverse Drug Reactions from Drug Targets Using Support Vector Machines.
753-759
- Koji Tashima, Naoko Izumi, Naoki Yonezaki:
A Quantitative Semantics of Formal Ontology of Drug Interactions.
760-766
- Sridhar Ramachandran, Dayananda Sagar Gangadharaiah:
No Tale in the Tail.
767-774
- Iraj Derakhshan:
Laterality of Motor Control and its Robotic Applications: A Paper and Pencil Method for Lateralizing the Major (Action, Thought) Hemisphere.
775-786
- Reetal Pai, James C. Sacchettini, Thomas R. Ioerger:
Specificity Normalization for Identifying Selective Inhibitors in Virtual Screening.
787-793
- Klaus Ecker, Jens Lichtenberg, Lonnie R. Welch:
The SiteSeeker Motif Discovery Tool.
794-797
Genetic Network Modeling and Inference
Bioinformatics and Applied Genomics in Latin America
- Roberto C. Togawa, Crisitna Ribeiro, Ivan Mazoni, Thais Pelligrinelli, Jose Jardine, Goran Neshich:
The Table of Interface Forming Residues as the Specificity Indicator for Serine Proteases Bound to Different Inhibitors.
811-817
- Gustavo Santos, Italo M. C. Maia, Fabiana F. Araújo, Ana Carolina L. Pacheco, Sarah Medeiros, Carla R. F. Gadelha, Samara C. Silva, Raimundo Araujo-Filho, Diana M. Oliveira:
HiperMUSCLE: An Intuitive Graphical User Interface for the Multiple Sequence Alignment Program MUSCLE (Edgar, 2004).
818-824
- Alex S. M. Ferraz, André A. N. Machado, Francisco F. U. Santos Júnior, Jamille S. M. Alves, Gandhi Rádis-Baptista, Kaprice F. F. de Sales, Diana M. de Oliveira, Sandra M. D. Moraes, José H. Leal-Cardoso, Valdenize Tizziani, Vânia M. Ceccatto:
Predictive evidence of phosphorylation sites using in silico resources and 2-D-gel of gastrocnemic muscle proteins as analytical model.
825-831
Late Papers
- Yiannis N. Kaznessis, Vassilios Sotiropoulos, Anthony D. Hill, Jonathan R. Tomshine, Katherine Volzing, John Barrett, Emma M. B. Weeding:
Multiscale Models for Synthetic Biology.
835-837
- Nan Wang, Changhe Yuan, Shane C. Burgess, Bindu Nanduri, Mark L. Lawrence, Susan Bridges:
Integrating Evidence for Evaluation of Potential Novel Protein-coding Genes Using Bayesian Networks.
838-843
- Chen Ke, Zhu Qingxin:
Similarity Search for Sequence Based On Grouped Seeds Criterion with Optimal Search Mechanism.
844-847
- Abdelhak Kheniche, Abdellah Salhi, Andrew Harrison, John M. Dowden:
A Deterministic Algorithm for DNA Sequence Comparison.
848-854
- Avinash Shankaranarayanan, Christine Amaldas:
TandemXP - A Computational Approach to Finding Approximate Tandem Repeats in Genomic Sequences.
855-861
- Md. Rezaul Bashar, Yan Li, Peng Wen:
Tissue Conductivity Anisotropy Inhomogeneity Study in EEG Head Modelling.
862-867
- Qingxin Zhu, Fan Yang, Ke Chen:
Optimal Search Model for Combined Strategy in Sequence Alignment.
868-874
- Avinash Shankaranarayanan, Christine Amaldas:
A Computational Framework for Performance Optimization of Bioinformatics ClustalW.
875-881
- M. Abdul Mottalib, Rahat Hossain:
Identification of Representative Protein Sequence and Secondary Structure Prediction using SVM Approach.
882-886
- Rajesh Singla, Hari Singh:
Analysis of Physiological Measures for Human Cognitive State Estimation.
887-890
- Satya Vani Guttula, Allam Appa Rao, G. R. Sridhar, M. S. Chakravarthy, Kunjum Nageshwararo, Paturi V. Rao, Hanuman Thota:
Cluster Analysis and Phylogenetic Relationship in Biomarker Identification of Microarray Data of Type 2 Diabetes and Nephropathy in Asian Indians.
891-896 Using A Binary Classification Method To Assess A Multi-Class Classifier For Protein Secondary Structure Prediction 897-902 Saad Subair,
Safaai Deris
- Fred Peng, Frederic Pio:
Computational Detection of TFBS in Apoptotic Protein Complexes.
903-909
- Said Hassan Ahmed, Tor Flå:
A Method to Identify Essential Features of Cold-adapted Enzymes.
910-917
- Kresimir Sikic, Branko Jeren, Sanja Tomic:
The Protein Secondary Structure Flexibility.
918-826
- Kresimir Sikic, Branko Jeren, Sanja Tomic:
Identifying Protein Flexibility by NMA.
927-933
- Fabio Mavelli, Marco Lerario, Kepa Ruiz-Mirazo:
ENVIRONMENT: A Stochastic Simulation Platform to Study Protocell Dynamics.
934-941
- Ionut Bebu, Françoise Seillier-Moiseiwitsch, Hongfang Liu:
Analysis of Microarray Titration Experiments.
942-946
- Chris Stowers, Erik Boczko:
Platescale: The Birthday Problem Applied to Single Molecule PCR.
947-953
- Arwa Al-Sultan, M. Arif Wani:
Hybrid Approach Based on Principal Component and Multiple Discriminant Analysis for Microarray Classification.
954-960
- Liangjiang Wang:
BindN+ for Improved Prediction of DNA or RNA Binding Residues in Protein Sequences Using Evolutionary Information.
961-964
- Taskeed Jabid, Mohammad Shoyaib, Syed Murtuza Baker, Firoz Anwar, Md. Mehedi Hasan:
Protein-Protein Interaction Detection from Primary Structure using Support Vector Machine.
965-969
- Yu-Ting Huang, Shih-Fang Lin, Von-Wun Soo:
Statistical Analysis on Detecting Signals of Adverse Drug Events with Drug-Drug Interactions.
970-976
- Ki-Young Kim, Ho-Seok Song, Jung-Ju Lee:
Development of a Human arm-liked Robotic Surgical System with Force Measurement for Laparoscopic Surgery.
977-983
- Chang Hun You, Lawrence B. Holder, Diane J. Cook:
Dynamic Graph-based Relational Learning of Temporal Patterns in Biological Networks Changing over Time.
984-990
- Xiaoyun Sun, Pengyu Hong:
Improving Automatic Inference of the Biological Network Governing C. elegans Vulval Induction by Incorporating Interaction Data.
991-997
- Hiroaki Kimura, Hajime Kitakami, Kotaro Araki, Keiichi Tamura:
A Stepwise Generalization Method for Extracting Minimum Generalized Set from Mismatch Cluster.
998-1004
- Yu-Chun Lin, Hsiang-Yuan Yeh, Cheng-Yu Yeh, Von-Wun Soo:
A Robust Network Alignment Algorithm for Detecting Evolutionarily Conserved Networks and Protein Complexes Across Species.
1005-1011
- Firoz Anwar, Syed Murtuza Baker, Mohammad Shoyaib, Taskeed Jabid, Md. Mehedi Hasan:
Identification of Gene using Machine Learning Technique.
1012-1014
- Gaolin Zheng, Tonny Sangutei, Yingjun Cao:
A Case Study of Genetic influence via Principal Component Analysis and Bayesian Factor Analysis.
1015-1021
- Harold Vasquez, Ana Isabel Aguilera, Leonid José Tineo Rodríguez:
Fuzzy Ontology Based Querying.
1022-1027
- Taner Kaya, Dima Kozakov, Sandor Vajda:
Clustering versus Scoring for the Identification of Near-Native Poses in Protein-Ligand Docking.
1028-1032
- Hanuman Thota, Sivaprasad Akula, Kunjum Nageswara Rao, Suresh Babu Changalsetty, Apparao Allam, Lalitha Saroja Thota:
Bioinformatics Aspects in Diabetic Neuropathy Using Functional Protein Sequences.
1033-1039
- Ping Gong, Mehdi Pirooznia, Xin Guan, J. Cristobal Vera, Chun Liang, Youping Deng, Chaoyang Zhang, Edward J. Perkins:
A Strategy for High Throughput Microarray Oligo Probe Design Using 454 and Sanger Sequencing Data of Eisenia fetida Expressed Sequence Tags.
1040-1043
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