5. BIBE 2005: Minneapolis, MN, USA
Fifth IEEE International Symposium on Bioinformatic and Bioengineering (BIBE 2005), 19-21 October 2005, Minneapolis, MN, USA. IEEE Computer Society 2005 ISBN 0-7695-2476-1
Introduction
- Chairs Forward.
- Committees.
Regular Papers
- Kun Yang, Jianzhong Li, Zhipeng Cai, Guohui Lin: A Model-Free and Stable Gene Selection in Microarray Data Analysis. 3-10
- Henry C. M. Leung, Francis Y. L. Chin: An Efficient Algorithm for the Extended (l, d)-Motif Problem with Unknown Number of Binding Sites. 11-18
- Usman Roshan, Dennis R. Livesay, David La: Improved Phylogenetic Motif Detection Using Parsimony. 19-26
- Bing Bing Zhou, Monther Tarawneh, Chen Wang, Albert Y. Zomaya, Richard P. Brent: A Novel Quartet-Based Method for Phylogenetic Inference. 32-39
- In-Yee Lee, Jan-Ming Ho, Ming-Syan Chen: GOMIT: A Generic and Adaptive Annotation Algorithm Based on Gene Ontology Term Distributions. 40-48
- Keith Marsolo, Srinivasan Parthasarathy, Michael D. Twa, Mark Bullimore: Classification of Biomedical Data through Model-Based Spatial Averaging. 49-56
- Keith Marsolo, Srinivasan Parthasarathy, Chris H. Q. Ding: A Multi-Level Approach to SCOP Fold Recognition. 57-64
- Zina Ben-Miled, Malika Mahoui, Mindi Dippold, Ali Farooq, Nianhua Li, Omran A. Bukhres: A Wrapper Induction Application with Knowledge Base Support: A Use Case for Initiation and Maintenance of Wrappers. 65-72
- Courtney Corley, Armin R. Mikler: Predicting Human Papilloma Virus Prevalence and Vaccine Policy Effectiveness in Demographic Strata. 73-80
- Tamer Kahveci, Venkatakrishnan Ramaswamy, Han Tao, Tao Li: Approximate Global Alignment of Sequences. 81-88
- Ilias Tagkopoulos, Nikolai Slavov, Sun-Yuan Kung: Multi-Class Biclustering and Classification Based on Modeling of Gene Regulatory Networks. 89-96
- Xia Cao, Beng Chin Ooi, HweeHwa Pang, Kian-Lee Tan, Anthony K. H. Tung: DSIM: A Distance-Based Indexing Method for Genomic Sequences. 97-104
- Jie Zheng, Stefano Lonardi: Discovery of Repetitive Patterns in DNA with Accurate Boundaries. 105-112
- Ssu-Hua Huang, Ru-Sheng Liu, Chien-Yu Chen, Ya-Ting Chao, Shu-Yuan Chen: Prediction of Outer Membrane Proteins by Support Vector Machines Using Combinations of Gapped Amino Acid Pair Compositions. 113-120
- Cheryl Chan, Parvin Mousavi: Discovery of Gene Expression Patterns across Multiple Cancer Types. 121-128
- Duygu Ucar, Srinivasan Parthasarathy, Sitaram Asur, Chao Wang: Effective Pre-Processing Strategies for Functional Clustering of a Protein-Protein Interactions Network. 129-136
- Jijun Tang, Li-San Wang: Improving Genome Rearrangement Phylogeny Using Sequence-Style Parsimony. 137-144
- Yuheng Li, Mario Lauria, Ralf Bundschuh: Suboptimal Alignments Improve the Detection of Weak Homologs in Sequence Database Searches. 153-160
- Jung Hun Oh, Jean Gao: Peptide Identification by Tandem Mass Spectra: An Efficient Parallel Searching. 161-168
- Xuezheng Fu, Hao Wang, William L. Harrison, Robert W. Harrison: RNA Pseudoknot Prediction Using Term Rewriting. 169-176
- Kaushik Sinha, Xuan Zhang, Ruoming Jin, Gagan Agrawal: Using Data Mining Techniques to Learn Layouts of Flat-File Biological Datasets. 177-184
- Alex E. Lash, Woei-Jyh Lee, Louiqa Raschid: A Methodology to Enhance the Semantics of Links between PubMed Publications and Markers in the Human Genome. 185-192
- Tie Wang, Jeffrey W. Touchman, Weiyi Zhang, Edward B. Suh, Guoliang Xue: A Parallel Algorithm for Extracting Transcription Regulatory Network Motifs. 193-200
- Pengjun Pei, Aidong Zhang: A Two-Step Approach for Clustering Proteins Based on Protein Interaction Profile. 201-209
- Shigeyuki Oba, Kikuya Kato, Shin Ishii: Multi-Scale Clustering for Gene Expression Profiling Data. 210-217
- Takashi Takenouchi, Masaru Ushijima, Shinto Eguchi: GroupAdaBoost for Selecting Important Genes. 218-221
- Nikolaos G. Bourbakis, Despina Kavraki: A 2D Vibration Array for Sensing Dynamic Changes and 3D Space for Blinds' Navigation. 222-226
- Nikolaos G. Bourbakis: Detecting Abnormal Patterns in WCE Images. 232-238
Short Papers
- Xian Xu, Aidong Zhang: Selecting Informative Genes from Microarray Dataset by Incorporating Gene Ontology. 241-245
- Jinyan Li, Huiqing Liu, Ling Li: Diagnostic Rules Induced by an Ensemble Method for Childhood Leukemia. 246-249
- Yingren Liu, Karuturi R. Krishna Murthy, Wing-Kin Sung: ConstrainedMotif: A Periodicity Constraint Based Algorithm to Predict Cell-Cycle Associated Promoter Motifs Using Time-Course Gene Expression Data. 250-257
- Dan He, Abdullah N. Arslan: A Parallel Algorithm for the Constrained Multiple Sequence Alignment Problem. 258-262
- Jianhua Xuan, Eric P. Hoffman, Robert Clarke, Yue Joseph Wang: Normalization of Microarray Data by Iterative Nonlinear Regression. 267-270
- Li Wang, Amutha Ramaswamy, Ilya P. Ioshikhes: Global Dynamics of Nucleosome Arrays: Influence of Variant Histone H2A.Z. 271-275
- Yi Li, Wing-Kin Sung, Lance D. Miller: Multimodality as a Criterion for Feature Selection in Unsupervised Analysis of Gene Expression Data. 276-280
- Di Wang, Guoren Wang, Qingquan Wu, Baichen Chen: Finding LPRs in DNA Sequence Based on a New Index - SUA. 281-284
- Xiaolu Huang, Hesham H. Ali, Anguraj Sadanandam, Rakesh K. Singh: Protein Motif Searching Through Similar Enriched Parikh Vector Identification. 285-289
- Yuchun Tang, Yan-Qing Zhang, Zhen Huang, Xiaohua Hu: Granular SVM-RFE Gene Selection Algorithm for Reliable Prostate Cancer Classification on Microarray Expression Data. 290-293
- Huimin Geng, Xutao Deng, Dhundy Bastola, Hesham H. Ali: On Clustering Biological Data Using Unsupervised and Semi-Supervised Message Passing. 294-298
- Paul E. Anderson, Douglas W. Raiford, Deacon J. Sweeney, Travis E. Doom, Michael L. Raymer: Stochastic Model of Protease-Ligand Reactions. 306-310
- Chun-Yuan Lin, Ken-Li Lin, Chuen-Der Huang, Hsiu-Ming Chang, Chiao Yun Yang, Chin-Teng Lin, Chuan Yi Tang, D. Frank Hsu: Feature Selection and Combination Criteria for Improving Predictive Accuracy in Protein Structure Classification. 311-315
- Ching-Tang Hsieh, Guang-Lin Hsieh, Eugene Lai, Zong-Ting Hsieh, Guo-Ming Hong: A Holter of Low Complexity Design Using Mixed Signal Processor. 316-319
- Nikolaos G. Bourbakis, Sokratis Makrogiannis, Despina Kavraki: A Neural Network-Based Detection of Bleeding in Sequences of WCE Images. 324-327
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