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ORCIDAlgorithms for Next-Generation Sequencing Data 2017
- Mourad Elloumi:
Algorithms for Next-Generation Sequencing Data, Techniques, Approaches, and Applications. Springer 2017, ISBN 978-3-319-59824-6
Indexing, Compression, and Storage of NGS Data
- Nadia Ben Nsira, Thierry Lecroq
, Mourad Elloumi:
Algorithms for Indexing Highly Similar DNA Sequences. 3-39 - David Weese, Enrico Siragusa:
Full-Text Indexes for High-Throughput Sequencing. 41-75 - Costas S. Iliopoulos, Solon P. Pissis, M. Sohel Rahman:
Searching and Indexing Circular Patterns. 77-90 - Gaëtan Benoit, Claire Lemaitre, Guillaume Rizk, Erwan Drezen, Dominique Lavenier:
De Novo NGS Data Compression. 91-115 - Evangelos Theodoridis:
Cloud Storage-Management Techniques for NGS Data. 117-128
Error Correction in NGS Data
- Marcel H. Schulz, Ziv Bar-Joseph:
Probabilistic Models for Error Correction of Nonuniform Sequencing Data. 131-145 - David Weese, Marcel H. Schulz, Hugues Richard:
DNA-Seq Error Correction Based on Substring Indices. 147-166 - Guillermo Barturen, José L. Oliver, Michael Hackenberg:
Error Correction in Methylation Profiling From NGS Bisulfite Protocols. 167-183
Alignment of NGS Data
- Carol Shen, Tony Shen, Jimmy Lin:
Comparative Assessment of Alignment Algorithms for NGS Data: Features, Considerations, Implementations, and Future. 187-202 - Yongchao Liu, Bertil Schmidt:
CUSHAW Suite: Parallel and Efficient Algorithms for NGS Read Alignment. 203-233 - Giulia Fiscon, Emanuel Weitschek:
String-Matching and Alignment Algorithms for Finding Motifs in NGS Data. 235-264
Assembly of NGS Data
- Géraldine Jean, Andreea Radulescu, Irena Rusu:
The Contig Assembly Problem and Its Algorithmic Solutions. 267-298 - Tomás Flouri, Jiajie Zhang, Lucas Czech, Kassian Kobert, Alexandros Stamatakis:
An Efficient Approach to Merging Paired-End Reads and Incorporation of Uncertainties. 299-325 - Matteo Comin, Michele Schimd:
Assembly-Free Techniques for NGS Data. 327-355
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